Skip to contents

Data

Example datasets

sampling_areas
Areas of interest where sampling points were generated
sampling_forests
Sub-areas of interest where sampling points were generated
sampling_points
Sampling points where animal surveys were conducted
animal_surveys
Animal surveys conducted at sampling points
animal_observations
Animal observation records from point surveys
points_landscape
Sampling points with landscape data summarised at multiple buffer radii

Animal surveys

Get, process and summarise data from animal surveys at point locations

random_pt_gen()
Randomly generate sampling points within a supplied area
filter_observations()
Filter animal observations based on specified criteria
tally_observations()
Tally number of species observations based on specified criteria
check_taxongrps()
Check taxon-group-level records in survey data
calculate_sac()
Extract species accumulation curves based on specified criteria
exclude_simulator()
Simulate multiple scenarios with animal surveys randomly excluded

Landscapes

Get, process and summarise landscape data at survey locations

get_buildings_osm()
Get building polygons from OpenStreetMap
get_roads_osm()
Get road lines from OpenStreetMap
mosaic_sen2r()
Create mosaics of Sentinel-2 images downloaded via the sen2r package
classify_image_binary()
Binary classification of a single-band image based on a threshold value
threshold_otsu()
Calculate pixel value threshold of a single-band image via Otsu's method
calc_manual()
Calculate metrics based on manually generated data at point locations
calc_lsm()
Calculate landscape metrics at point locations
calc_osm()
Calculate metrics based on OpenStreetMap data at point locations
calc_specific_lsm()
Calculate specific landscape metrics at point locations
calc_specific_osm()
Calculate specific metrics from OpenStreetMap data at point locations

Models

Predict and validate animal diversity

generate_grid()
Generate regular grid of spatial points within target area of interest
predict_heatmap()
Generate continuous raster of spatial predictions
validate_newdata()
Validate the accuracy of provided models using new data from animal surveys